Monkeypox assembly, variant calling, and lineage analysis pipeline

This repository contains workflows for processing NCBI SRA monkeypox
from different sequencing platforms including Illumina. The
2022 monkeypox outbreak was declared as a Public Health Emergency of International Concern by the World Health Organization (WHO). The Monkeypox virus can cause a rash
that can present as p

This is a companion discussion topic for the original entry at