Monkeypox assembly, variant calling, and lineage analysis pipeline
This repository contains workflows for processing NCBI SRA monkeypox
data from different sequencing platforms including Illumina. The
2022 monkeypox outbreak was declared as a Public Health Emergency of International Concern by the World Health Organization (WHO). The Monkeypox virus can cause a rash
that can present as p
This is a companion discussion topic for the original entry at github.com/DNAstack/monkeypox-processing-pipeline