MSSNG DB6 Joint Genotyping Pipeline

This pipeline was used for performing joint genotpying on the entire 10,000 sample MSSNG autism cohort for the DB6 release. The pipeline is written and optimized to run on GCP and currently will not run in other cloud or local environments.


The pipeline will take a file comprising a list of gs:// urls pointing to all of the 10,000 GVCF files generated during the upstream steps. Due to the ra

This is a companion discussion topic for the original entry at