Perform VQSR on the GVCFtyper_main files - they will be combined into a single file, VQSR performed, and then re-split by chromosome. All chromosome GVCFtyper_main files should be input here, and one GVCFtyper_main.recal recalibrated main file per chromosome will be output. Also input the chr__.bed region files from the previous step.

Running Sentieon

In order to use Sentieon, you must possess a license, distributed as either a key, a server, or a gcp project. T

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