MSSNG DB6 VQSR
Perform VQSR on the GVCFtyper_main files - they will be combined into a single file, VQSR performed, and then re-split by chromosome. All chromosome GVCFtyper_main files should be input here, and one GVCFtyper_main.recal recalibrated main file per chromosome will be output. Also input the chr__.bed region files from the previous step.
Running Sentieon
In order to use Sentieon, you must possess a license, distributed as either a key, a server, or a gcp project. T
This is a companion discussion topic for the original entry at github.com/DNAstack/mssng-db6-vqsr