ChIP-seq Analysis Pipeline
A Nextflow-based workflow for preprocessing, quality control, single-nucleosome peak calling, and differential enrichment analysis of single-end ChIP-seq data.
Workflow overview
This pipeline performs a complete ChIP-seq data analysis starting from raw FASTQ files and ending with a list of differentially enriched single-nucleosome peaks.
All steps are fully automated and designed to ensure reproducibility and consistency across computing environments.
This is a companion discussion topic for the original entry at github.com/genespace-workflows/chip-seq