Single-Cell RNA-seq Analysis Pipeline
A Nextflow-based workflow for processing and analysis of 10x Genomics single-cell RNA-seq data.
Workflow overview
This pipeline performs comprehensive scRNA-seq data analysis from raw data preprocessing through cell type annotation. All tools run in isolated Docker containers, ensuring reproducibility across different computing environments.
Workflow Summary
1. Read Quality Assessment
- Quality control using FastQC (v0.12.1)
This is a companion discussion topic for the original entry at github.com/genespace-workflows/sc_analysis