Github.com/getwilds/wilds-wdl-library/ww-sra-cellranger

Automatic Tools and Workflows
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ww-sra-cellranger Pipeline

Project Status: Experimental – Useable, some support, not open to feedback, unstable API.
License: MIT

A WILDS WDL pipeline for downloading single-cell RNA-seq data from SRA and processing with Cell Ranger count.

Overview

This pipeline combines the ww-sra and `ww-cel

This is a companion discussion topic for the original entry at github.com/getwilds/wilds-wdl-library/ww-sra-cellranger