HCR-seq
This repo contains code for processing and analyzing HCR-seq data
Installation
To install this package and its prerequisites
conda install -f environment.yaml
pip install -e .
Preparing an HCR-seq reference
Both the amplicon and single-cell workflows are built on top of a shared Reference object
(pickled to a .pkl file) that describes each reporter plasmid, its associated lesions, and how
repair pathways should be calculated from those reporters.
The latest vers
This is a companion discussion topic for the original entry at github.com/getzlab/HCRseq/hcrseq_scRNA_preprocess