GTEx-RNAseq-pipeline
This repository contains WDL workflows for processing RNA seq data (FASTQ and BAM inputs). This is a clone of the GTEx Consortium RNAseq repo with minor improvements, please see: gtex-pipeline/rnaseq at master · broadinstitute/gtex-pipeline · GitHub
Please note that the WDL here is written in WDL draft-2 and is not directly transferable to WDL 1.0 or development.
This is a companion discussion topic for the original entry at github.com/gulhanlab/GTEx-RNAseq-pipeline/GTEx-RNAseq-BAM