Cohort SV detection pipeline
Table of contents
This repository contains pipeline scripts for structural variation detection in large cohorts. The pipeline is designed for Illumina paired-end whole genome sequencing data, preferably with at least 30x sequence coverage. Data inputs should be a set of sorted CRAM files, aligned with BWA-MEM.
This pipeline detects structural variation based
This is a companion discussion topic for the original entry at github.com/hall-lab/sv-pipeline/pre_merge_sv_single1