MPRA oligo/barcode reconstruction and barcode counting pipeline (two parts)
Written in the Written Description Language (WDL) version 1.0 more info here
Before running the pipeline
We have the whole environment containerized, the definition file is available in the environment/ folder of this repository.
If you are unable to run the pipeline via a container, then set up your environment as described below:
- Have modules for Cromwell, Womtool, FLAS
This is a companion discussion topic for the original entry at github.com/HarshpreetChandok/terra_testing1/example_1