MPRA oligo/barcode reconstruction and barcode counting pipeline (two parts)

Written in the Written Description Language (WDL) version 1.0 more info here

Before running the pipeline

We have the whole environment containerized, the definition file is available in the environment/ folder of this repository.

If you are unable to run the pipeline via a container, then set up your environment as described below:

  • Have modules for Cromwell, Womtool, FLAS

This is a companion discussion topic for the original entry at