github.com/icgc-argo-workflows/vcfqc/VCFQC

Introduction

icgc-argo-workflows/vcfqc is a reproducible bioinformatics workflow that can be used to obtain QC metrics from variant calls in VCF/BCF format. It has been created to support quality control efforts within ICGC-ARGO project. The aggregated QC metrics are formed to align with the GA4GH WGS_Quality_Control_Standards.