github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation

Automatic Tools and Workflows
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This workflow will run OxoG, variantbam, and annotate.
Run this as dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json

This is a companion discussion topic for the original entry at github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation