This workflow generates Hi-C contact maps for genome assemblies in the Pretext format. It is compatible with one or 2 haplotypes. It includes tracks for PacBio read coverage, Gaps, and telomeres. The Pretext files can be open in PretextView for the manual curation of genome assemblies.
This is a companion discussion topic for the original entry at github.com/iwc-workflows/hi-c-contact-map-for-assembly-manual-curation/main