github.com/iwc-workflows/kmer-profiling-hifi-VGP1/main

Automatic Tools and Workflows
1

VGP Workflow #1

This workflow produces a Meryl database and Genomescope outputs that will be used to determine parameters for following workflows, and assess the quality of genome assemblies. Specifically, it provides information about the genomic complexity, such as the genome size and levels of heterozygosity and repeat content, as well about the data quality.

Inputs

  • Collection of Hifi long reads in FASTQ format

Outputs

  • Meryl Database of kmer counts

  • GenomeScope

This is a companion discussion topic for the original entry at github.com/iwc-workflows/kmer-profiling-hifi-VGP1/main