WDLs
Illumina reads alignment
bwa_mem2.wdl
ONT reads alignment
minimap2_ubam.wdl
- starting with unaligned bams and saving methylation tags
minimap2_fastq.wdl
- starting with fastqs
additional args:
-k 17 -y -K 5G --eqx
HiFi reads alignment
pbmm2.wdl
This is a companion discussion topic for the original entry at github.com/jimin001/WDLs/DeepSomatic_ONT_tumoronly