Alpha Satellite Annotation

This repository holds WDL workflows and Docker build scripts for alpha satellite annotation.


WDL of the HumAS-HMMER For AnVIL workflow – which is a modified version of HumAS-HMMER.


  • input_fastas: genomic assemblies or long contigs. Files must be in fa or fa.gz format
  • hmm_profile: main hmm profile
  • hmm_profile_SF: hmm profile for creati

This is a companion discussion topic for the original entry at