ctat-mutations
Click the Wiki link at top for the ctat-mutation documentation.
Easiest to use leveraging Docker or Singularity: ctat_mutations_docker_singularity · TrinityCTAT/ctat-mutations Wiki · GitHub
Otherwise, tTo download the software, click the ‘Releases’ tab and download the tar.gz.
Note, if you’re going to clone the code from github, do it recursively like so:
git clone --recursive GitHub - TrinityCTAT/ctat-mutations: Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
This is a companion discussion topic for the original entry at github.com/lijin0303/ctat-mutations