WDL Workflows
WDL workflows for useful tools.
WDL Cromwell Dependencies
Download cromwell tools to run wdl worflows locally:
wget https://github.com/broadinstitute/cromwell/releases/download/71/cromwell-71.jar
wget https://github.com/broadinstitute/cromwell/releases/download/71/womtool-71.jar
Install jdk
sudo apt-get update
sudo apt install openjdk-17-jre-headless
Install docker ( directions from here Install Docker Engine on Ubuntu | Docker Docs )
curl -fsSL https:/
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/extractVcfRegion'>github.com/meredith705/wdl_workflows/extractVcfRegion</a></small>