github.com/MethodsDev/IRfinder-mdl/irfinder-mdl

IRfinder-mdl WDL workflow

A WDL 1.0 workflow that runs the full IRfinder-mdl pipeline on a single
sorted+indexed BAM. Compatible with Cromwell, miniWDL, and Terra.

Workflow shape

                  ┌───────────────────────────┐
gtf ────(optional)─►  BuildIntrons             ├─► introns.tsv.gz
                  └───────────────────────────┘             │
                                                            ▼
introns_tsv (optional)─────────────────────────► ┌─────────────────┐
  
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/MethodsDev/IRfinder-mdl/irfinder-mdl'>github.com/MethodsDev/IRfinder-mdl/irfinder-mdl</a></small>