Alamut Batch Step
The Alamut batch step runs the Alamut batch program to annotate a VCF file with
reference data from the provided Alamut database.
Input Parameters
- File input_vcf - required - the VCF file to annotate
- String output_basename - optional - the output file basename, defaults to the input_vcf name with the file extension(s) dropped
- File alamut_db - required - the Alamut database file
- File alamut_fields_tsv - optional - file that defines the rules for transforming the Al
This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/AlamutBatchWorkflow