FAST Output Parser and NVA Report
FASTOutputParserTask
The FASTOutputParserTask takes a tab-delimited export of FAST annotated sample data and produces
a parsed output with variants categorized that is used to populate an Excel workbook for review.
Input Parameters
| Type | Name | Req’d | Description | Default Value |
|---|---|---|---|---|
| File | fast_output_file | Yes | The tab-delimited FAST annotated sample data export | |
| String | sample_type | Yes | The sample typ |
This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/FASTOutputParser