Probe Coverage Regions Workflow
Exercises the coverage region inputs (BED file and ROI gene
clusters) by converting a CRAM to BAM and running the
DepthOfCoverage ROI, Gene, and Summary tasks against it.
The WGS task is skipped because it does not use the region
inputs under test.
Sub-tasks
CramToBam
Converts the input CRAM to a coordinate-sorted, indexed BAM
using the supplied reference.
DepthOfCoverageWorkflow
Delegates to the DepthOfCoverage step with run_wgs = false.
See [Dept
This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/ProbeCoverageRegions