QCEval Task
Applies QC rules depending on project type and adds the QC value to the INFO field in the VCF
Input Parameters
- File input_vcf - required - the input VCF file
- String output_basename - optional - the basename that will be used to name the output file, defaults to the input
VCF name with file extensions removed and “.qceval” added - String project_type - required - the type of project, one of “WGS”, “WGS_DRAGEN”, “WES” or “NONE”
- String docker_image - required - the qceval
This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/QCEval