ReblockGVCFandPush Workflow
workflow assumes input will be a gvcf file located in a local GCP bucket
workflow reblocks input gvcf files producting reblocked gvcf files as output
Reblocking perfromed using the Broad’s RebockGVCFv2.2.1 WDL
Found at: “https://raw.githubusercontent.com/broadinstitute/warp/f0e6d797fef941c2cfea260a9dd0adcb8effe961/pipelines/broad/dna_seq/germline/joint_genotyping/reblocking/ReblockGVCF.wdl”
Input Parameters
input_gvcf: gvcf file to reblock
input_gvcf_index: inde
This is a companion discussion topic for the original entry at github.com/mgbpm/biofx-workflows/ReblockGVCFandPush