Github.com/pdeepakb/sra-fetch-fastq-docker

[system]

SRA WDL Dockstore Template

This repository contains a Dockstore-compatible WDL workflow for downloading protected dbGaP SRA files from an SRR ID list using prefetch.

Structure

.
├── dockstore.wdl
├── dockstore.yml
├── test_inputs/
│   ├── test_input.json
│   └── srr_list.txt
├── wdl/
│   └── main.wdl
└── README.md

How to Use

1. Replace test_inputs/prj_xxxx.ngc with your actual dbGaP .ngc file.
2. Update the output_directory path in test_input.json with your GCS buc

---

This is a companion discussion topic for the original entry at github.com/pdeepakb/sra-fetch-fastq-docker