Somatic Workflow for Variant Discovery with GATK4
This repository contains a WDL (Workflow Description Language) workflow for performing multi-sample somatic variant calling using GATK4. The workflow covers preprocessing, single nucleotide variant (SNV) calling, copy number variation (CNV) calling, and clonal analysis. It is available on Dockstore to import into e.g. a [Terra](https://app.t
This is a companion discussion topic for the original entry at github.com/phylyc/somatic_workflow/CalculateContamination