Sarek - Workflow For Somatic And Germline Variations
Usage: nextflow run SciLifeLab/Sarek --sample <file.tsv> [--step STEP] --genome <Genome> nextflow run SciLifeLab/Sarek --sampleDir <Directory> [--step STEP] --genome <Genome> --sample <file.tsv> Specify a TSV file containing paths to sample files. --sampleDir <Directoy> Specify a directory containing sample files. --test Use a test sample. --step Option to start workflow Possible value
This is a companion discussion topic for the original entry at github.com/SciLifeLab/Sarek/Sarek