Sliding Window Association Testing workflow runs sliding-window association tests. It can use Burden, SKAT [1], fastSKAT [2], SMMAT [3], or SKAT-O [4] to aggregate all variants in a window.
Sliding window Workflow consists of several steps. Define Segments divides genome into segments, either by a number of segments, or by a segment length. Note that number of segments refers to whole genome, not a number of segments per chromosome Association test is then performed for each segment in para
This is a companion discussion topic for the original entry at github.com/sevenbridges-openworkflows/GENESIS-Sliding-window-association-testing