TCR Recovery for Seq-Well single-cell RNA-seq data. More to be added here.


Hardware: macOS (tested), linux (untested) or Windows (untested). Recommended 16GB RAM and at least 50 GB free space on hard drive.
Software: Python >= 3.8.5, pysam ==, pandas == 1.1.2, bowtie2 >= 2.4.1, samtools >= 1.3.1, Java 12.0.1 (recommended), Drop-Seq Tools >= 2.3.0

Install instructions

It’s best you create a new virtual environment. Example using conda on macOS:

This is a companion discussion topic for the original entry at