MANGO trio DMR workflow (WDL) for AnVIL / Terra
This is the batch route for running MANGO on AnVIL: a WDL workflow that runs
the exact same pipeline as the app via the mango-run CLI, on Cromwell, reading
gs:// modBAMs that Terra localizes automatically. It is the better fit for
genome-wide runs on very large BAMs and for sharing a reproducible pipeline with
the GREGoR consortium through Dockstore. (For interactive, plot-driven analysis
of a single trio, use the MANGO app route — the i
This is a companion discussion topic for the original entry at github.com/shaybehesht/methylation-pipeline/mango_trio