This is a GWAS pipeline that is intended to be run with biobank size data
The workflow is designed to be modular with a main workflow file that calls the preprocessing subworkflow and (optionally) the GWAS tools.
Currently it supports Bolt-LMM and SAIGE.
Inputs for the workflow
genotype files (required)
The pipeline requires both directly genotyped and im
This is a companion discussion topic for the original entry at github.com/shukwong/gwas-pipelines/meta_analysis_workflow