This is a GWAS pipeline that is intended to be run with biobank size data

The workflow is designed to be modular with a main workflow file that calls the preprocessing subworkflow and (optionally) the GWAS tools.
Currently it supports Bolt-LMM and SAIGE.

Inputs for the workflow

genotype files (required)

The pipeline requires both directly genotyped and im

This is a companion discussion topic for the original entry at