SMC-RNA challenge fusion detection submission
Gene fusion detection workflow using STAR fusion (Thomas Yu, Ryan Spangler, Kyle Ellrot) and Chimerascan 0.4.5 (nccu/cn_chimerascan) - Requirements: 1- Download/untar SMC provided star_index.tar.gz (syn5987269) and chimerascan_bowtie1_index.tar.gz (syn7217759) 2- Create json/jaml input file using parameters specified in the workflow inputs section: csindex, starindex, fastq, fqstq2 eg. json: { ‘csindex’: {‘class’: ‘File’,‘path’: 'chimerascan_bowtie1_
This is a companion discussion topic for the original entry at github.com/smc-rna-challenge/cndgf-7378934/cndgf-7378934