github.com/talkowski-lab/gnomad-sv-v3-qc/MainVcfQc

[system]

GATK-SV

A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data.

Table of Contents

• Requirements
• Citation
• Quickstart
• Pipeline Overview
  • Cohort mode
  • Single-sample mode
  • gCNV model
  • Generating a reference panel
• Module Descriptions
  • [GatherSamp

---

This is a companion discussion topic for the original entry at github.com/talkowski-lab/gnomad-sv-v3-qc/MainVcfQc