github.com/UW-GAC/primed-inventory-workflows/primed_phenotype_inventory

Automatic Tools and Workflows
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primed-inventory-workflows

Workflows for generating the PRIMED inventory workspace

Notes for development

Decisions after discussion with Stephanie:

  • Input should be a json/map where the key is billingproject/workspace and the value is the string of studies
    • Use the write map function in WDL! See validation workflows - they use it
  • Write directly to the final phenotype inventory table - do not create a tsv
  • Delete the final phenotype inventory table and rewrite each time the workflo
This is a companion discussion topic for the original entry at github.com/UW-GAC/primed-inventory-workflows/primed_phenotype_inventory