github.com/UW-GAC/primed-pgs-catalog/primed_pgsc_calc

Automatic Tools and Workflows
1

primed-pgs-catalog

This repository contains code to fetch data from the PGS catalog and format it
in data tables in the PRIMED data model.

Load the functions with source('pgs-catalog-functions.R')

pgs_scoring_file_table:

  • pgs_id: id from the PGS Catalog, e.g. “PGS000001”
  • dest_bucket: google bucket path where the files will be copied to. Do not include a trailing “/”
  • harmonized; whether to retrieve the scores files harmonized t
This is a companion discussion topic for the original entry at github.com/UW-GAC/primed-pgs-catalog/primed_pgsc_calc