primed-pgs-queries
This repository contains PRIMED queries of the PGS Catalog using the PGS Catalog API.
Usage
Mapping PubmedIDs to the PGS catalog
The map_pmids.py python script can be used to map a list of PubmedIDs to the PGS catalog.
The script requires a csv file containing a list of PubmedIDs (one per line).
The script will output three json files in the specified output directory (--outdir), which conta
This is a companion discussion topic for the original entry at github.com/UW-GAC/primed-pgs-queries/pgs_variant_overlap