prsmixsumstats_wdl
Workflow for running an elastic net model on summary statistics
This workflow implements the elastic net model from the prsmixsumstats R package.
| input | description |
|---|---|
| sumstats | RDS file with summary statistics |
| trait_type | “binary” or “quant” |
| maxiter | (optional) maximum number of iterations to attempt for each (alpha,lambda), default 500 |
| output | description |
|---|---|
| glmnet_fit | RDS file with grid of fits for a r |
This is a companion discussion topic for the original entry at github.com/UW-GAC/prsmixsumstats_wdl/get_sample_counts