Common Workflow Language (CWL) for rMATS
Dependencies
- Dependencies for generating the CWL (https://www.commonwl.org) can be installed with
conda create --prefix ./rmats_cwl_conda_env
conda activate ./rmats_cwl_conda_env
conda install -c conda-forge -c bioconda --file ./conda_requirements.txt
Generate CWL
- pl_rMATS_bam.R is implemented with https://github.com/rworkflow/Rcwl
- A CWL file that
This is a companion discussion topic for the original entry at github.com/Xinglab/rmats-turbo/rmats-turbo-cwl