Nextflow for rMATS
- rmatsTurbo.nf is a Nextflow (https://www.nextflow.io) implementation of the rMATS workflow with BAM files as input
Run
Locally
- Install: https://www.nextflow.io/docs/latest/install.html
- Edit nextflow.config
- Run:
nextflow run rmatsTurbo.nf --config nextflow.config -resume
On the cloud
Nextflow can be configured to run on the cl
This is a companion discussion topic for the original entry at github.com/Xinglab/rmats-turbo/rmats-turbo-nextflow