github.com/xuefzhao/cdp-genome-analysis/InferIntervalList

Automatic Tools and Workflows
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CDP Genome Analysis Pipeline

Scripts and workflows for processing whole-genome sequencing (WGS) data from
Constitutional Delayed Puberty (CDP) samples — from raw sequencing reads
through joint-called variant files and downstream statistical analyses.

Overview

This repository contains the complete bioinformatics pipeline used to:

  1. Process raw WGS data (FASTQ → aligned BAM)
  2. Call structural variants (SVs), short tandem repeats (STRs), and small
    variants (SNVs/indels) per s
This is a companion discussion topic for the original entry at github.com/xuefzhao/cdp-genome-analysis/InferIntervalList