wf-taplin-download
Files for collecting MS data files from Taplin server
- Python script (downloadTaplinData.py) to login and download data from Taplin server
- Dockerfile to containerize the Python script and install dependencies (with gcloud CLI)
- cloudbuild.yaml to build and push docker image to Google Artifact Registry via Cloud Build
- taplin-download.wdl to define the workflow to be run:
(1) download and upload data to a google bucket
(2) check integrity of downloaded .raw file - .do
This is a companion discussion topic for the original entry at github.com/yuhanhsu/wf-taplin-download/taplin-download