PCAWG DKFZ variant calling workflow is developed by German Cancer Research Center
(DKFZ, https://www.dkfz.de), it consists of software components calling somatic substitutions, indels
and copy number variations using uniformly aligned tumor / normal WGS sequences. The workflow has been
dockerized and packaged using CWL workflow language, the source code is available on
GitHub at: https://github.com/ICGC-TCGA-PanCancer/dkfz_dockered_workflows.
This workflow has been tested using cwltool version
This is a companion discussion topic for the original entry at quay.io/pancancer/pcawg-dkfz-workflow