This app was exported from precisionFDA (https://precision.fda.gov).
It was created by Mark Wright, Stanford University
This a forked version of the BWA-MEM app posted originally by the precisionFDA team with a simple modification allowing for a single FASTQ file to be specified which has paired-end reads in interleaved format. Simply specify the single file as the forward file and set interleaved mode to true.
Original README follows
This app maps Illumina FASTQ r
This is a companion discussion topic for the original entry at registry.hub.docker.com/pfda2dockstore/bwa_mem_bamsormadup/bwa_mem_bamsormadup