This app was exported from precisionFDA (
It was created by Mark Wright, Stanford University


This a forked version of the BWA-MEM app posted originally by the precisionFDA team with a simple modification allowing for a single FASTQ file to be specified which has paired-end reads in interleaved format. Simply specify the single file as the forward file and set interleaved mode to true.

Original README follows

What’s this?

This app maps Illumina FASTQ r

This is a companion discussion topic for the original entry at