Registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller-hs37d5decoy/gatk-haplotypecaller-hs37d5decoy

This app was exported from precisionFDA (https://precision.fda.gov).
It was created by Justin Zook, NIST.

HaplotypeCaller

Call germline SNPs and indels via local re-assembly of haplotypes.

Offical documentation: https://software.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_haplotypecaller_HaplotypeCaller.php

Modified to use GRCh37 with hs37d5 reference


This is a companion discussion topic for the original entry at registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller-hs37d5decoy/gatk-haplotypecaller-hs37d5decoy