This app was exported from precisionFDA (https://precision.fda.gov).
It was created by Justin Zook, NIST.
Call germline SNPs and indels via local re-assembly of haplotypes.
Modified to use GRCh37 with hs37d5 reference
Filter using default hard filters recommended by GATK best practices:
SNPS: --filterExpression "QD < 2.0 ||
This is a companion discussion topic for the original entry at registry.hub.docker.com/pfda2dockstore/gatk-hs37d5decoy-hardfilter/gatk-hs37d5decoy-hardfilter