Your post in "registry.hub.docker.com/broadinstitute/pcawg_broad_wgs_variant_callers"

[byb121]

registry.hub.docker.com/broadinstitute/pcawg_broad_wgs_variant_callers

PCAWG Broad variant calling workflow is developed by the Broad Institute (https://www.broadinstitute.org](https://www.broadinstitute.org)), it consists of software components calling somatic substitutions, indels and structural variations using uniformly aligned tumor / normal WGS sequences. The workflow has been dockerized and packaged using WDL workflow language, the source code is available on GitHub at: https://github.com/ICGC-TCGA-PanCancer/pcawg-broad-wgs-variant-caller.

Hi Denis,

Is there somewhere I can download “gs://firecloud-tcga-open-access/tutorial/reference/public_full10.tar.gz”. I’d like to have a go of this tool, but currently am lack of the reference set.

Thanks,
Yaobo

[SolomonShorser-OICR]

Hi Yaobo,
The file can also be found here on this page: https://dcc.icgc.org/releases/PCAWG/reference_data/pcawg-broad

(download link is https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-broad/pcawg_broad_public_refs_full.tar.gz)

Thanks,
Solomon Shorser.

[byb121]

Got it. Thanks a lot.

Yaobo